Treesearch

The mountain beaver (Aplodontia rufa) is notably the most primitive North American rodent with a restricted distribution in the Pacific Northwest based on its physiological limits to heat stress and water needs. The Point Arena subspecies (A. r. nigra) is federally listed as endangered and is 1 of 2 subspecies that have extremely small and disjunct distributions, putting the taxon at risk from habitat loss and warming global temperatures. We sought to understand their range-wide distribution, to predict the environmental features that best describe their occurrence, and to establish a...

Prothonotary Warblers (Protonotaria citrea) are Nearctic-Neotropic migrants that have experienced declining populations over the past 50 yr. Determining their migration routes and wintering areas are critical steps in identifying habitats used by species and populations of conservation concern. We captured a male Prothonotary Warbler on its breeding territory in Louisiana in June 2013 and attached a geolocator. We recaptured this male in March 2014 and analysis of the geolocator data revealed that the male traveled an estimated 7950 km through seven countries. Fall migration was characteriz...

Mountain meadow habitats are valued for their ecological importance. They attenuate floods, improve water quality, and support high biodiversity. Many meadow habitats in the western US are degraded, and efforts are increasing to restore these montane meadow ecosystems. Rewatering projects such as pond-and-plug quickly raise the water table by blocking the existing incised stream channel and can result in the rapid recovery of wet meadow habitats. Based on the existing literature, however, it is difficult to determine realistic expectations for outcomes of restoration projects across a...

The fungal pathogen Batrachochytrium dendrobatidis (Bd) has caused declines and extinctions in amphibians worldwide, and there is increasing evidence that some strains of this pathogen are more virulent than others. While a number of putative virulence factors have been identified, few studies link these factors to specific epizootic events. We documented a dramatic decline in juvenile frogs in a Bd-infected population of Cascades frogs (Rana cascadae) in the mountains of northern California and used a laboratory experiment to show that Bd isolated in the midst of this decline induced...

Identifying transcription factor target genes is essential for modeling the transcriptional networks underlying developmental processes. Here we report a chromatin immunoprecipitation sequencing (ChIP-seq) resource consisting of genome-wide binding regions and associated putative target genes for four Populus homeodomain transcription factors expressed during secondary growth and wood formation. Software code (programs and scripts) for processing the Populus ChIP-seq data are provided within a publically available iPlant image, including tools for ChIP-seq data quality control and evaluatio...

We examined responses of the woodland salamander Ensatina (Ensatina eschscholtzii) to commercial thinning by helicopter in late-seral Douglas-fir forest in northwestern California, USA, using a before-after control-impact (BACI) design. We employed passive pitfall traps on eight (four each treatment and control) 100 trap grids over eight years (1996–2003), three years pre- and five years post-treatment. We conducted 3–11 weekly site visits within each of 10 trap periods depending upon weather over two spring and eight fall periods for a total of 50 visits to test for differences in surface...

Summary1. Counter-gradient growth, where growth per unit temperature increases as temperature decreases, can reduce the variation in ectothermic growth rates across environmental gradients. Understanding how ectothermic species respond to changing temperatures is essential to their conservation and management due to human-altered habitats and changing climates.2. Here, we use two contrasting populations of western pond turtles (Actinemys marmorata) to model the effect of artificial and variable temperature regimes on growth and age at reproductive maturity. The two populations occur on...

Water diversions can disrupt flows and alter thermal regimes changing seasonal patterns that signal the onset of life-history functions of native organisms and compromise the fitness of their populations. We compared size, growth, relative mass, volumetric body condition, and reproductive status of Western Pond Turtles (Actinemys marmorata) across a decade on two forks of California’s Trinity River, one regulated and the other free-flowing. Turtles on the regulated fork experienced flows designed to accommodate anthropocentric demands, whereas those on the free-flowing fork experienced...

Although disturbances such as fire and native insects can contribute to natural dynamics of forest health, exceptional droughts, directly and in combination with other disturbance factors, are pushing some temperate forests beyond thresholds of sustainability. Interactions from increasing temperatures, drought, native insects and pathogens, and uncharacteristically severe wildfire are resulting in forest mortality beyond the levels of 20th-century experience. Additional anthropogenic stressors, such as atmospheric pollution and invasive species, further weaken trees in some regions....

Strategic fire and fuel management planning benefits from detailed understanding of how wildfire occurrences are distributed spatially under current climate, and from predictive models of future wildfire occurrence given climate change scenarios. In this study, we fitted historical wildfire occurrence data from 1986 to 2009 to a suite of spatial point process (SPP) models with a model averaging approach. We then predicted human- and lightning-caused wildfire occurrence over the 2010-2100 period in the Lake Tahoe Basin, a forested watershed in the western US with an extensive wildland-urban...