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- The 2013 Rim Fire, originating on Forest Service land, burned into old-growth forests within Yosemite National Park with relatively restored frequent-fire regimes (¡Ý2 predominantly low and moderate severity burns within the last 35 years). Forest structure and fuels data were collected in the field 3-4 years before the fire, providing a rare chance to use pre-existing plot data to analyze fire effects. We used regression tree and random forests analysis to examine the influence of forest structure, fuel, fire history, topographic and weather conditions on observed fire severity in the Rim...AuthorsJamie Lydersen, Malcolm P. North, Brandon M. CollinsKeywordsSourceForest Ecology and ManagementYear2014
- Background: One of the great advantages of next generation sequencing is the ability to generate large genomic datasets for virtually all species, including non-model organisms. It should be possible, in turn, to apply advanced computational approaches to these datasets to develop models of biological processes. In a practical sense, working with non-model organisms presents unique challenges. In this paper we discuss some of these challenges for ChIP-seq and RNA-seq experiments using the undomesticated tree species of the genus Populus. Results: We describe specific challenges associated...AuthorsLijun Liu, V. Missirian, Matthew S. Zinkgraf, Andrew T. Groover, V. FilkovSourceBMC Genomics. 15(Suppl 5): S3Year2014
- Inventories of greenhouse gas (GHG) emissions from wildfire provide essential information to the state of California, USA, and other governments that have enacted emission reductions. Wildfires can release a substantial amount of GHGs and other compounds to the atmosphere, so recent increases in fire activity may be increasing GHG emissions. Quantifying wildfire emissions however can be difficult due to inherent variability in fuel loads and consumption and a lack of field data of fuel consumption by wildfire. We compare a unique set of fuel data collected immediately before and after six...AuthorsJamie Lydersen, Brandon M. Collins, Carol Ewell, Alicia Reiner, Jo Ann Fites, Christopher Dow, Patrick Gonzalez, David Saah, John BattlesKeywordsSourceJournal of Geophysical Research: BiogeosciencesYear2014
- Southern California deserts and coastal sage scrub (CSS) are undergoing vegetation-type conversion to exotic annual grassland, especially in regions downwind of urban areas that receive high nitrogen (N), primarily as dry deposition. To determine critical loads (CLs) of N that cause negative impacts, we measured plant and soil responses along N deposition gradients, fertilized vegetation at different N levels, and used biomass production output from the DayCent model. Nitrogen deposition gradients were identified from the CMAQ model and compared with measured N deposition values. Coastal...AuthorsE.B. Allen, L.E. Rao, G. Tonnesen, R.F. Johnson, Mark E. Fenn, Andrzej BytnerowiczSourceIn: Sutton, M.A. et al., eds. Nitrogen Deposition, Critical Loads and Biodiversity. Netherlands: Springer: 319-327. Chapter 34Year2014
- This chapter reports the findings of a Working Group to review the critical loads (CLs) and levels approach for nitrogen (N). The three main approaches to estimating CLs are empirical, mass balance and dynamic modelling. Examples are given of recent developments in Europe, North America and Asia and it is concluded that other countries should be encouraged to develop basic assessments using soil, land cover, and deposition map overlays in order to determine what regions might exceed nitrogen CLs. There is a need for increasing the certainty of critical load (CL) estimates by focusing on...AuthorsT.A. Clair, T. Blett, J. Aherne, M.P.M. Aidar, R. Artz, W.J. Bealey, W. Budd, J.N. Cape, C.J. Curtis, L. Duan, Mark E. Fenn, P. Groffman, R. Haeuber, J.R. Hall, J.-P. Hettelingh, D. López-Hernández, B. Mathieson, Linda Pardo, M. Posch, Richard Pouyat, T. Spranger, H. Sverdrup, H. van Dobben, A. van HinsbergKeywordsSourceIn: Sutton, M.A. et al., eds. Nitrogen Deposition, Critical Loads and Biodiversity. Netherlands: Springer: 481-491. Chapter 50Year2014
- Industrial activities in the oil sands region of Alberta, Canada have resulted in greatly elevated emissions of SO2 and N (NOx and NH3) and there are concerns over possible widespread ecosystem acidification. Acid sensitive soils in the region are common and have very low base cation weathering rates: the median base cation weathering rate estimated for 63 sites using PROFILE was just 17 mmolc m− 2 yr− 1. Deposition of S and N in throughfall was approximately twice as high as deposition measured with open collectors and could be as high as 360 mmolc m− 2 yr− 1 within 20 km of the main...AuthorsShaun A. Watmough, Colin J. Whitfield, Mark E. FennKeywordsSourceScience of The Total Environment. 493: 1-11Year2014
- Major ion chemistry (2000-2009) from 208 lakes (342 sample dates and 600 samples) in class I and II wilderness areas of the Sierra Nevada was used in the Steady-State Water Chemistry (SSWC) model to estimate critical loads for acid deposition and investigate the current vulnerability of high elevation lakes to acid deposition. The majority of the lakes were dilute (mean specific conductance = 8.0 µS cm−1) and characterized by low acid neutralizing capacity (ANC; mean = 56.8µeq L−1). Two variants of the SSWC model were employed: (1) one model used the F-factor and (2) the alternate model...AuthorsGlenn D. Shaw, Ricardo Cisneros, Donald Schweizer, James O. Sickman, Mark E. FennKeywordsSourceWater, Air, & Soil Pollution. 225(1)Year2014
- Air quality and air quality related values are important resources to the National Park Service (NPS) units and Wilderness areas in northern Southeast Alaska. Air quality monitoring was prioritized as a high-priority Vital Sign at the Southeast Alaska Network’s (SEAN) Inventory and Monitoring Program’s terrestrial scoping workshop (Derr and Fastie 2006). Air quality monitoring of fossil fuel combustion emission products and heavy metals was conducted at several sites in the Southeast Alaska Network (SEAN) parks, the Tongass National Forest’s Tracy Arm-Fords Terror Wilderness, and in the...AuthorsD. Schirokauer, L. Geiser, Andrzej Bytnerowicz, Mark E. Fenn, K. DillmanKeywordsSourceNatural Resource Technical Report. NPS/SEAN/NRTR—2014/839. National Park Service. Fort Collins, ColoradoYear2014
- Nitrogen (N) deposition is impacting a number of ecosystem types in California. Critical loads (CLs) for N deposition determined for mixed conifer forests and chaparral/oak woodlands in the Sierra Nevada Mountains of California and the San Bernardino Mountains in southern California using empirical and various modelling approaches were compared. Models used included the Simple Mass Balance (SMB) model for nutrient N and acidification (both site-specific and regional approaches) and the Daycent process-based biogeochemical simulation model. Empirical CLs reported herein were based on...AuthorsMark E. Fenn, H.-D. Nagel, I. Koseva, J. Aherne, Sarah Jovan, L.H. Geiser, A. Schlutow, T. Scheuschner, Andrzej Bytnerowicz, B.S. Gimeno, F. Yuan, S.A. Watmough, E.B. Allen, R.F. Johnson, T. MeixnerKeywordsSourceIn: Sutton, M.A., et al. eds. Nitrogen deposition, critical loads and biodiversity. Netherlands: Springer: 357-368. Chapter 38.Year2014
- Seasonal and diurnal flight patterns of the invasive walnut twig beetle, Pityophthorus juglandis, were assessed between 2011 and 2014 in northern California, USA in the context of the effects of ambient temperature, light intensity, wind speed, and barometric pressure. Pityophthorus juglandis generally initiated flight in late January and continued until late November. This seasonal flight could be divided approximately into three phases (emergence: January–March; primary flight: May–July; and secondary flight: September–October). The seasonal flight response to the male-produced aggregatio...AuthorsYigen Chen, Steve J. SeyboldSourcePLOS ONE. www.plosone.org. 9(8): 15 pYear2014