Treesearch

Genetics and genomics are increasingly important in forestry management and conservation. Next generation sequencing can increase analytical power, but still relies on building on the structure of previously acquired data. Data standards and data sharing allow the community to maximize the analytical power of high throughput genomics data. The landscape of incomplete submissions, minimal metadata, and distributed raw data inhibits aspects of data re-use, validation, and discovery. Community databases can address these challenges for their research communities by collecting and integrating...

Water temperature drives the complex food web of a river network. Aquatic organisms hatch, feed, and reproduce in thermal niches within the tributaries and mainstem that comprise the river network. Changes in water temperature can synchronize or asynchronize the timing of their life stages throughout the year. The water temperature fluctuates over time and place, creating variability in the network’s thermal regime. Because of this variability, many important details in the thermal regime of a river network cannot be simply represented by an average temperature. New research by Ashley...

Conservation status assessments are a valuable tool for the management and protection of rare and endangered species. Categorizing and defining rarity, threats, and population trends is often the first step toward understanding and documenting the health of the world’s plant diversity. Having up to date conservation status assessments for all of North America’s native tree species, based on a globally standardized system, would enable an objective and systematic prioritization of species for future conservation action and enable stakeholders from a wide range of sectors to engage in...

Aldo Leopold once said “to keep every cog and wheel is the first precaution of intelligent tinkering.” The USDA Forest Service has embarked on a long-term effort to do just that. Our gene conservation efforts in forest trees are a modest beginning to this urgent need. In the early 2000s, the Forest Health Protection Program and its partners in the National Forest System and Research and Development Deputy Areas of the Forest Service initiated seed collections in several five-needle pine species that were succumbing to white pine blister rust and bark beetle attacks at accelerated rates. We...

Effective national plant conservation has several basic needs, including: 1) accessible, up-to-date information on species distribution and rarity; 2) research and management capacity to mitigate the impact of threats that make plants rare; 3) effective networks for conserving species in situ and ex situ; 4) education and training to make sure the right people are addressing the issues; 5) policy that supports conservation; 6) funding to maintain the infrastructure for plant conservation; and 7) effective communications so that plants are valued and supported by the public. The more...

conservation of forest genetic resources (FGR). After presenting internationally adopted definitions of some terms related to FGR, the characteristics of the current state of FGR conservation from a global perspective are summarized. Many international and regional organizations and institutions are engaged in the conservation of FGR at degrees ranging from core mandate to indirect interest. Relevant actors are listed under each of the following categories: United Nations agencies and programs; the Rio Conventions; Consortium of International Agricultural Research Centres (CGIAR); advocacy...

It is estimated that there are at least 60,000 tree species globally and that more than 20 percent of them are threatened with extinction. This threatened tree diversity will have a critical impact for solving some of this century’s major challenges in the areas of energy, water scarcity, human health, food security, climate change and habitat degradation. Botanic gardens and arboreta offer the opportunity to conserve and manage a wide range of plant diversity ex situ, and in situ in the broader landscape. The rationale that botanic gardens have a major role to play in preventing plant...

The ‘Gene Conservation of Tree Species—Banking on the Future Workshop’ provided a forum for presenting and discussing issues and accomplishments in genetic conservation of trees, and notably those of North America. The meeting gathered scientists, specialists, administrators and conservation practitioners from federal, university, non-governmental and public garden institutions worldwide. The 81 submissions included in this Proceedings are from oral and poster presentations at the 2016 workshop held in Chicago, Illinois. They update the science and policy of genetic conservation of trees,...

Premise of the study: We investigated whether wood metabolite profiles from direct analysis in real time (time-of-flight) mass spectrometry (DART-TOFMS) could be used to determine the geographic origin of Douglas-fir wood cores originating from two regions in western Oregon, USA. Methods: Three annual ring mass spectra were obtained from 188 adult Douglas-fir trees, and these were analyzed using random forest models to determine whether samples could be classified to geographic origin, growth year, or growth year and geographic origin. Specific wood molecules that contributed to geographic...

A reference genome sequence for Pseudotsuga menziesii var. menziesii (Mirb.) Franco (Coastal Douglas-fir) is reported, thus providing a reference sequence for a third genus of the family Pinaceae. The contiguity and quality of the genome assembly far exceeds that of other conifer reference genome sequences (contig N50 = 44,136 bp and scaffold N50 = 340,704 bp). Incremental improvements in sequencing and assembly technologies are in part responsible for the higher quality reference genome, but it may also be due to a slightly lower exact repeat content in Douglas-fir vs. pine and spruce....