Treesearch

There has been a recent increase in the frequency and extent of wildfires in interior Alaska, and this trend is predicted to continue under a warming climate. Although less well documented, corresponding increases in fire severity are expected. Previous research from boreal forests in Alaska and western Canada indicate that severe fire promotes the recruitment of deciduous tree species and decreases the relative abundance of black spruce (Picea mariana) immediately after fire. Here we extend these observations by (1) examining changes in patterns of aspen and spruce density and biomass...

The Arctic is in transition from climate-driven thawing of permafrost. We investigate satellite-derived water equivalent mass changes, snow water equivalent with in situ measurements of runoff and ground-survey derived geoid models from 1999 through 2009. The Alaskan Arctic coastal plain groundwater storage (including wetland bog, thaw pond and lake) is increasing by 1. 15 ± 0.65 km3/a (area-average 1.10 ± 0.62 cm/a), and Yukon River watershed groundwater storage is decreasing by 7.44 ± 3.76 km3/a (area-average 0.79 ± 0.40 cm/a). Geoid changes show increases within the Arctic coastal...

In the boreal region, soil organic carbon (OC) dynamics are strongly governed by the interaction between wildfire and permafrost. Using a combination of field measurements, numerical modeling of soil thermal dynamics, and mass-balance modeling of OC dynamics, we tested the sensitivity of soil OC storage to a suite of individual climate factors (air temperature, soil moisture, and snow depth) and fire severity. We also conducted sensitivity analyses to explore the combined effects of fire-soil moisture interactions and snow seasonality on OC storage. OC losses were calculated as the...

A major objective of tree improvement programs is to identify genotypes that will perform well in operational deployments. Relatively little is known, however, about how the competitive environment affects performance in different types of deployments. We tested whether the genetic composition and density of deployments affect the performance of full-sib families of Douglas-fir (Pseudotsuga meniziesii), and whether traits related to crown morphology could help to explain differences in family performance under competition. Seedlings from eight families were planted in pure-family and three...

Milkweeds (Asclepias L.) have been extensively investigated in diverse areas of evolutionary biology and ecology; however, there are few genetic resources available to facilitate and compliment these studies. This study explored how low coverage genome sequencing of the common milkweed (Asclepias syriaca L.) could be useful in characterizing the genome of a plant without prior genomic information and for development of genomic resources as a step toward further developing A. syriaca as a model in ecology and evolution. The results highlight the promise of next generation sequencing for...

Climate change resulting from increased concentrations of atmospheric carbon dioxide ([C02]) is expected to result in warmer temperatures and changed precipitation regimes during this century. In the northwestern U.S., these changes will likely decrease snowpack, cause earlier snowmelt, increase summer evapotranspiration, and increase the frequency and severity of droughts. Elevated C02 and warmer temperatures may have positive effects on growth and productivity where there is adequate moisture or growth is currently limited by cold. However, the effects of climate change are generally...

The consequences of species introductions into non-native habitats are a major cause for concern in the U.S. Of particular interest are the effects of predation by introduced fishes on native amphibian communities. We sought to determine whether Foothill Yellow-legged Frog (Rana boylii) larvae could recognize non-native Small mouth Bass (Micropterus dolomieu) as a predatory threat. Through a series of laboratory experiments, we examined the initial and overall behavioral responses of larvae to native predators (Rough-skinned newts, Taricha granulosa), introduced predators (M. dolomieu),...

Visual estimation techniques were used to quantify seasonal habitat characteristics, habitat use, and longitudinal distribution of juvenile steelhead Oncorhynchus mykiss, coastal cutthroat trout O. clarkii clarkii and coho salmon O. kisutch in a coastal Oregon basin. At the channel unit scale, fish distribution was not proportional to habitat type availability. Pool habitats contained a disproportionate percentage of the salmonid assemblage, and the percentage of fish in pools increased as flow decreased. Large woody debris formed 57-68% of pool habitats and was significantly correlated...

Science-based wildlife management relies on genetic information to infer population connectivity and identify conservation units. The most commonly used genetic marker for characterizing animal biodiversity and identifying maternal lineages is the mitochondrial genome. Mitochondrial genotyping figures prominently in conservation and management plans, with much of the attention focused on the non-coding displacement (“D”) loop. We used massively parallel multiplexed sequencing to sequence complete mitochondria: genomes from 40 fishers, a threatened carnivore that possesses low mitogenomic...

Loblolly pine (LP; Pinus taeda L.) is the most economically important tree in the U.S. and a cornerstone species in southeastern forests. However, genomics research on LP and other conifers has lagged behind studies on flowering plants due, in part, to the large size of conifer genomes. As a means to accelerate conifer genome research, we constructed a BAC library for the LP genotype 7-56. The LP BAC library consists of 1,824,768 individually-archived clones making it the largest single BAC library constructed to date, has a mean insert size of 96 kb, and affords 7.6X coverage of the 21.7...